All functions

anc2nwk()

Converts a tree given as parent vector format to an ancestor matrix

anc2parentVector()

Converts an ancestor matrix to a tree in parent vector format

ancMatrixToParVector()

Converts a an ancestor matrix to tree in parent vector format

cf2treedata()

Convert CF matrix to tree data

childList2nwk()

Converts a tree given as lists of children to the Newick tree format

getChildListFromParentVector()

Convert a parent vector format to the list of children

getNewickCode()

Converts a tree given as lists of children to the Newick tree format

isCFM()

Conflict matrix or Not

nwk2anc()

Convert the newick format tree to an ancestor matrix

nwk2cf()

Convert nwk to CFMatrix

nwk2parentVector()

Convert the newick format tree to a parent vector format

parentVector2anc()

Converts a tree given as parent vector format to an ancestor matrix

parentVector2ancMatrix()

Converts a tree given as parent vector format to an ancestor matrix

parentVector2nwk()

Convert a parent vector format to the newick format tree

stack_mutationTree()

Stack mutations to node and make branch length to number of mutation

treedata2cf()

Convert treedata to CFMatrix

treedata2gv()

Convert tree data to gv file